PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g036630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 731aa    MW: 80457.7 Da    PI: 5.4942
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g036630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.72.9e-20582678295
                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                     +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ l +ed  ++r+W++++++  ++ks++y+l+ ++ +Fvk ngL+egDf+v++  ++ +++
  Csa19g036630.1 582 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISLAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVKTNGLQEGDFIVIY--SDvKCG 673
                     79*************************999999********7778*******99777777777777.********************..555999 PP

                     ..EEE CS
              B3  91 elvvk 95 
                     +++++
  Csa19g036630.1 674 KYLIR 678
                     88776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-28576688IPR015300DNA-binding pseudobarrel domain
CDDcd100152.86E-38579680No hitNo description
SuperFamilySSF1019362.94E-22580674IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.602581683IPR003340B3 DNA binding domain
SMARTSM010195.6E-19581683IPR003340B3 DNA binding domain
PfamPF023623.2E-16582677IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MKSLHVAANG GDLAEDCGIL AGDADEAILM DGMDDVGREI WLNDHGGDHS HHHAHGDDDL  60
IVHHDPSLFY GDLPTLPDFP CMSSSSSSST SPAPVNAIVS SASSSSAASS STSSAASWAI  120
LRSDGEDPAP NQNQYGSGKC DESSGALQST ASMEIPLETS QGFGCGEGGG DCIDMMETFG  180
YMDLLDSNEF FDTSAIFSQD DDTQNPNLMD QTLERQQDQV VVPMLENNSG GDMQMMNSSL  240
EQDDDLATVF LEWLKNNKET VSAEDLRKVK IKKATIESAA RRLGGGKEAM KQLLKLILEW  300
VQTNHLQRRR TVTTTNNNNL SYQQSFQQDP FQNANPNNNN LIPPSDQTCF SPSTWVPTPQ  360
PQQAFVSDPG FGYMPAPSYP PPPPEYLPIL ESPPSWPPPP PQSGPMPHQQ FPMPPNPQYN  420
QFGEPTGFTG YNMNPYQYPY IPPGQMRDQR LLRLCSSATK EARKKRMARQ RRFLSHHHRH  480
NNNNNNSTNQ QNQNQVGETC TAVAPQLNPV ATTATGGTWM YWPNVPSVPP QLPPPMETQL  540
PTMDRAGSAS AMPRQQVVPV PVPVPDRRQG WKPEKNLRFL LQKVLKQSDV GNLGRIVLPK  600
KEAETHLPEL EARDGISLAM EDIGTSRVWN MRYRFWPNNK SRMYLLENTG DFVKTNGLQE  660
GDFIVIYSDV KCGKYLIRGV KVRQPTGQKQ EAPPSSAAAT KRQNKSQRNV NNNSPSASVV  720
VASPASQTVK *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0024730.0AJ002473.1 Arabidopsis thaliana gene encoding ABI3 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488574.10.0PREDICTED: B3 domain-containing transcription factor ABI3-like
SwissprotQ015930.0ABI3_ARATH; B3 domain-containing transcription factor ABI3
TrEMBLD7L5710.0D7L571_ARALL; Putative uncharacterized protein
STRINGAT3G24650.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102802531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.10.0B3 family protein